IL_6HCF_040

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_040 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.3643

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6HCF|1|52|C|1431
6HCF|1|52|G|1432
6HCF|1|52|A|1433
6HCF|1|52|G|1434
6HCF|1|52|G|1435
*
6HCF|1|52|C|1449
6HCF|1|52|C|1450
6HCF|1|52|G|1451
6HCF|1|52|A|1452
6HCF|1|52|G|1453

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain b3

eL29