IL_6HCF_059

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_059 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3149

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6HCF|1|52|A|1858
6HCF|1|52|C|1859
6HCF|1|52|U|1860
6HCF|1|52|U|1861
*
6HCF|1|52|A|1873
6HCF|1|52|A|1874
6HCF|1|52|C|1875
6HCF|1|52|U|1876

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 72

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain b3

eL29