IL_6HCF_065
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6HCF|1|52|C|1935, 6HCF|1|52|A|2041, 6HCF|1|52|U|2044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_065 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2073
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|52|G|1933
6HCF|1|52|A|1934
6HCF|1|52|C|1935
6HCF|1|52|C|1936
6HCF|1|52|C|1937
6HCF|1|52|C|1938
6HCF|1|52|A|1939
6HCF|1|52|G|1940
6HCF|1|52|A|1941
6HCF|1|52|A|1942
6HCF|1|52|A|1943
6HCF|1|52|A|1944
*
6HCF|1|52|U|2038
6HCF|1|52|G|2039
6HCF|1|52|A|2040
6HCF|1|52|A|2041
6HCF|1|52|A|2042
6HCF|1|52|A|2043
6HCF|1|52|U|2044
6HCF|1|52|G|2045
6HCF|1|52|G|2046
6HCF|1|52|A|2047
6HCF|1|52|U|2048
6HCF|1|52|G|2049
6HCF|1|52|G|2050
6HCF|1|52|C|2051
6HCF|1|52|G|2052
6HCF|1|52|C|2053
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 72
- 5S ribosomal RNA; 5S rRNA
- Chain B3
- uL3
- Chain I3
- 60S ribosomal protein L10
- Chain O3
- uL13
- Chain f3
- eL33
- Chain m3
- eL40
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