IL_6HCF_070
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|52|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_070 not in the Motif Atlas
- Geometric match to IL_3V7E_002
- Geometric discrepancy: 0.1945
- The information below is about IL_3V7E_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
6HCF|1|52|C|2302
6HCF|1|52|C|2303
6HCF|1|52|U|2304
6HCF|1|52|U|2305
6HCF|1|52|G|2306
6HCF|1|52|A|2307
6HCF|1|52|A|2308
6HCF|1|52|G|2309
*
6HCF|1|52|U|2329
6HCF|1|52|G|2330
6HCF|1|52|G|2331
6HCF|1|52|A|2332
6HCF|1|52|G|2333
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain Y3
- Ribosomal protein L26
- Chain e3
- eL32
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