IL_6HCF_091

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6HCF|1|52|A|3663, 6HCF|1|52|U|3679, 6HCF|1|52|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_091 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.2028

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6HCF|1|52|C|3660
6HCF|1|52|G|3661
6HCF|1|52|A|3662
6HCF|1|52|A|3663
6HCF|1|52|G|3664
6HCF|1|52|G|3665
*
6HCF|1|52|U|3677
6HCF|1|52|G|3678
6HCF|1|52|U|3679
6HCF|1|52|U|3680
6HCF|1|52|G|3681
6HCF|1|52|A|3682
6HCF|1|52|C|3683
6HCF|1|52|G|3684

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain p3

eL43