IL_6HCF_101

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_101 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2485

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6HCF|1|52|U|3950
6HCF|1|52|G|3951
6HCF|1|52|A|3952
*
6HCF|1|52|U|4060
6HCF|1|52|G|4061
6HCF|1|52|A|4062

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain u3

uL1