IL_6HCF_102

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

6HCF|1|52|U|3957, 6HCF|1|52|G|3958, 6HCF|1|52|U|3959, 6HCF|1|52|A|3962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_102 not in the Motif Atlas

Geometric match to IL_5TBW_378

Geometric discrepancy: 0.376

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCF|1|52|G|3955
6HCF|1|52|G|3956
6HCF|1|52|U|3957
6HCF|1|52|G|3958
6HCF|1|52|U|3959
6HCF|1|52|A|3960
6HCF|1|52|G|3961
6HCF|1|52|A|3962
6HCF|1|52|A|3963
6HCF|1|52|U|3964
6HCF|1|52|A|3965
6HCF|1|52|A|3966
*
6HCF|1|52|U|4055
6HCF|1|52|A|4056
6HCF|1|52|C|4057

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain u3

uL1