IL_6HCF_121

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6HCF|1|52|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_121 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.2326

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6HCF|1|52|C|4582
6HCF|1|52|C|4583
6HCF|1|52|A|4584
6HCF|1|52|U|4585
*
6HCF|1|52|A|4717
6HCF|1|52|G|4718
6HCF|1|52|G|4719
6HCF|1|52|C|4720
6HCF|1|52|G|4721

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13