IL_6HCF_125

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6HCF|1|52|U|4634, 6HCF|1|52|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_125 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.3165

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6HCF|1|52|U|4632
6HCF|1|52|G|4633
6HCF|1|52|U|4634
6HCF|1|52|A|4635
6HCF|1|52|U|4636
6HCF|1|52|G|4637
*
6HCF|1|52|C|4662
6HCF|1|52|G|4663
6HCF|1|52|A|4664
6HCF|1|52|A|4665
6HCF|1|52|G|4666

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain W3

eL24

Chain d3

eL31