IL_6HCF_138
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 6HCF|1|72|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_138 not in the Motif Atlas
- Geometric match to IL_5TBW_069
- Geometric discrepancy: 0.3926
- The information below is about IL_5TBW_069
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6HCF|1|72|C|15
6HCF|1|72|A|16
*
6HCF|1|72|U|62
6HCF|1|72|C|63
6HCF|1|72|G|64
Current chains
- Chain 72
- 5S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain I3
- 60S ribosomal protein L10
- Chain J3
- Ribosomal protein L11
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