IL_6HCF_142
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_142 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3396
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HCF|1|72|G|71
6HCF|1|72|U|72
6HCF|1|72|U|73
6HCF|1|72|A|74
6HCF|1|72|G|75
6HCF|1|72|U|76
6HCF|1|72|A|77
6HCF|1|72|C|78
*
6HCF|1|72|G|98
6HCF|1|72|G|99
6HCF|1|72|A|100
6HCF|1|72|A|101
6HCF|1|72|U|102
6HCF|1|72|A|103
6HCF|1|72|C|104
Current chains
- Chain 72
- 5S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain F3
- uL30
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
- Chain T3
- eL21
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