IL_6HCF_150
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACGCAC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|A1|C|65, 6HCF|1|A1|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_150 not in the Motif Atlas
- Geometric match to IL_1M5K_001
- Geometric discrepancy: 0.2952
- The information below is about IL_1M5K_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.1
- Basepair signature
- cWW-cWW-L-R-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HCF|1|A1|U|63
6HCF|1|A1|A|64
6HCF|1|A1|C|65
6HCF|1|A1|G|66
6HCF|1|A1|C|67
6HCF|1|A1|A|68
6HCF|1|A1|C|69
*
6HCF|1|A1|G|80
6HCF|1|A1|U|81
6HCF|1|A1|G|82
6HCF|1|A1|A|83
6HCF|1|A1|A|84
6HCF|1|A1|A|85
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain H1
- 40S ribosomal protein S6
- Chain W3
- eL24
- Chain Z1
- eS24
Coloring options: