IL_6HCF_163
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6HCF|1|A1|U|368, 6HCF|1|A1|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_163 not in the Motif Atlas
- Geometric match to IL_4ERD_001
- Geometric discrepancy: 0.3947
- The information below is about IL_4ERD_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6HCF|1|A1|U|366
6HCF|1|A1|U|367
6HCF|1|A1|U|368
6HCF|1|A1|C|369
6HCF|1|A1|G|370
6HCF|1|A1|A|371
*
6HCF|1|A1|U|393
6HCF|1|A1|G|394
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
- Chain R3
- eL19
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