IL_6HCF_183
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_183 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2743
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|A1|G|807
6HCF|1|A1|A|808
6HCF|1|A1|A|809
6HCF|1|A1|A|810
6HCF|1|A1|A|811
6HCF|1|A1|A|812
6HCF|1|A1|A|813
6HCF|1|A1|U|814
6HCF|1|A1|U|815
*
6HCF|1|A1|A|849
6HCF|1|A1|C|850
6HCF|1|A1|C|851
6HCF|1|A1|G|852
6HCF|1|A1|C|853
6HCF|1|A1|A|854
6HCF|1|A1|G|855
6HCF|1|A1|C|856
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain M1
- Ribosomal protein S11
- Chain X1
- Ribosomal protein S15a
Coloring options: