IL_6HCF_190
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|A1|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_190 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2045
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6HCF|1|A1|G|952
6HCF|1|A1|C|953
6HCF|1|A1|U|954
6HCF|1|A1|A|955
6HCF|1|A1|G|956
*
6HCF|1|A1|C|967
6HCF|1|A1|U|968
6HCF|1|A1|U|969
6HCF|1|A1|G|970
6HCF|1|A1|G|971
6HCF|1|A1|A|972
6HCF|1|A1|C|973
6HCF|1|A1|C|974
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain C1
- 40S ribosomal protein S3a
- Chain P1
- uS11
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