IL_6HCF_192
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_192 not in the Motif Atlas
- Geometric match to IL_4LFB_033
- Geometric discrepancy: 0.1514
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6HCF|1|A1|C|1047
6HCF|1|A1|G|1048
6HCF|1|A1|A|1049
6HCF|1|A1|A|1050
6HCF|1|A1|G|1051
*
6HCF|1|A1|C|1067
6HCF|1|A1|G|1068
6HCF|1|A1|U|1069
6HCF|1|A1|A|1070
6HCF|1|A1|G|1071
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain P1
- uS11
- Chain b1
- eS26
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