IL_6HCF_193
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_193 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1915
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6HCF|1|A1|C|1098
6HCF|1|A1|G|1099
6HCF|1|A1|A|1100
6HCF|1|A1|U|1101
*
6HCF|1|A1|G|1131
6HCF|1|A1|C|1132
6HCF|1|A1|A|1133
6HCF|1|A1|G|1134
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain B1
- uS2
- Chain C1
- 40S ribosomal protein S3a
- Chain O1
- uS15
- Chain S1
- eS17
- Chain b1
- eS26
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