IL_6HCF_232

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_232 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.2757

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6HCF|1|52|G|461
6HCF|1|52|G|462
6HCF|1|52|A|463
6HCF|1|52|G|464
*
6HCF|1|52|C|691
6HCF|1|52|A|692
6HCF|1|52|C|693
6HCF|1|52|C|694

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain r3

eL28