IL_6HCF_247
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CACUU*AACUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_247 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3879
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6HCF|1|52|C|1857
6HCF|1|52|A|1858
6HCF|1|52|C|1859
6HCF|1|52|U|1860
6HCF|1|52|U|1861
*
6HCF|1|52|A|1873
6HCF|1|52|A|1874
6HCF|1|52|C|1875
6HCF|1|52|U|1876
6HCF|1|52|G|1877
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 72
- 5S ribosomal RNA; 5S rRNA
- Chain F3
- uL30
- Chain b3
- eL29
Coloring options: