IL_6HCF_265

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACCGU*ACAGGUU

Length

13 nucleotides

Bulged bases

6HCF|1|52|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_265 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.355

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HCF|1|52|G|4534
6HCF|1|52|A|4535
6HCF|1|52|C|4536
6HCF|1|52|C|4537
6HCF|1|52|G|4538
6HCF|1|52|U|4539
*
6HCF|1|52|A|4546
6HCF|1|52|C|4547
6HCF|1|52|A|4548
6HCF|1|52|G|4549
6HCF|1|52|G|4550
6HCF|1|52|U|4551
6HCF|1|52|U|4552

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain A3

Ribosomal protein L8

Chain j1

eRF1(AAQ)