IL_6HCF_279
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUAUGGU*AACGUC
- Length
- 14 nucleotides
- Bulged bases
- 6HCF|1|A1|G|113, 6HCF|1|A1|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_279 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3792
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|A1|G|108
6HCF|1|A1|U|109
6HCF|1|A1|U|110
6HCF|1|A1|A|111
6HCF|1|A1|U|112
6HCF|1|A1|G|113
6HCF|1|A1|G|114
6HCF|1|A1|U|115
*
6HCF|1|A1|A|348
6HCF|1|A1|A|349
6HCF|1|A1|C|350
6HCF|1|A1|G|351
6HCF|1|A1|U|352
6HCF|1|A1|C|353
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
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