IL_6HCF_291

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGCGG*CCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_291 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3499

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HCF|1|A1|G|692
6HCF|1|A1|A|693
6HCF|1|A1|G|694
6HCF|1|A1|C|695
6HCF|1|A1|G|696
6HCF|1|A1|G|697
*
6HCF|1|A1|C|729
6HCF|1|A1|C|730
6HCF|1|A1|G|731
6HCF|1|A1|U|732
6HCF|1|A1|C|733
6HCF|1|A1|C|734

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain I1

40S ribosomal protein S7

Chain X1

Ribosomal protein S15a