IL_6HCF_296

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_296 not in the Motif Atlas

Homologous match to IL_8P9A_426

Geometric discrepancy: 0.4696

The information below is about IL_8P9A_426

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6HCF|1|A1|U|1101
6HCF|1|A1|G|1102
6HCF|1|A1|C|1103
6HCF|1|A1|G|1104
*
6HCF|1|A1|C|1128
6HCF|1|A1|G|1129
6HCF|1|A1|G|1130
6HCF|1|A1|G|1131

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S3a

Chain O1

uS15

Chain S1

eS17

Chain c1

40S ribosomal protein S27