IL_6HCF_319

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_319 not in the Motif Atlas

Homologous match to IL_8CRE_033

Geometric discrepancy: 0.2482

The information below is about IL_8CRE_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6HCF|1|52|C|1551
6HCF|1|52|G|1552
6HCF|1|52|A|1553
6HCF|1|52|A|1554
6HCF|1|52|G|1555
*
6HCF|1|52|U|1572
6HCF|1|52|G|1573
6HCF|1|52|G|1574
6HCF|1|52|A|1575
6HCF|1|52|G|1576

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain p3

eL43