IL_6HCF_330

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_330 not in the Motif Atlas

Homologous match to IL_8P9A_319

Geometric discrepancy: 0.2129

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6HCF|1|52|G|3895
6HCF|1|52|C|3896
6HCF|1|52|G|3897
6HCF|1|52|G|3898
*
6HCF|1|52|U|4563
6HCF|1|52|A|4564
6HCF|1|52|C|4565

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13