IL_6HCF_350

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_350 not in the Motif Atlas

Homologous match to IL_8CRE_411

Geometric discrepancy: 0.2079

The information below is about IL_8CRE_411

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6HCF|1|A1|G|437
6HCF|1|A1|G|438
6HCF|1|A1|A|439
*
6HCF|1|A1|U|454
6HCF|1|A1|A|455
6HCF|1|A1|C|456

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6

Chain J1

eS8