IL_6HCF_355
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_355 not in the Motif Atlas
- Homologous match to IL_8P9A_428
- Geometric discrepancy: 0.1541
- The information below is about IL_8P9A_428
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|A1|G|1168
6HCF|1|A1|G|1169
6HCF|1|A1|A|1170
6HCF|1|A1|G|1171
6HCF|1|A1|U|1172
6HCF|1|A1|A|1173
6HCF|1|A1|U|1174
6HCF|1|A1|G|1175
*
6HCF|1|A1|U|1186
6HCF|1|A1|G|1187
6HCF|1|A1|A|1188
6HCF|1|A1|A|1189
6HCF|1|A1|A|1190
6HCF|1|A1|C|1191
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain Y1
- uS12
- Chain n3
- eL41
Coloring options: