IL_6HCF_356
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6HCF|1|A1|G|1285, 6HCF|1|A1|U|1314, 6HCF|1|A1|U|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_356 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3431
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6HCF|1|A1|G|1281
6HCF|1|A1|A|1282
6HCF|1|A1|C|1283
6HCF|1|A1|A|1284
6HCF|1|A1|G|1285
6HCF|1|A1|G|1286
6HCF|1|A1|A|1287
6HCF|1|A1|U|1288
6HCF|1|A1|U|1289
6HCF|1|A1|G|1290
*
6HCF|1|A1|C|1309
6HCF|1|A1|U|1310
6HCF|1|A1|C|1311
6HCF|1|A1|G|1312
6HCF|1|A1|A|1313
6HCF|1|A1|U|1314
6HCF|1|A1|U|1315
6HCF|1|A1|C|1316
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain L1
- eS10
- Chain N1
- 40S ribosomal protein S12
- Chain e1
- uS14
- Chain g1
- Ribosomal protein S27a
Coloring options: