IL_6HCF_357
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6HCF|1|A1|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_357 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3739
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6HCF|1|A1|C|1395
6HCF|1|A1|A|1396
6HCF|1|A1|U|1397
6HCF|1|A1|G|1398
6HCF|1|A1|C|1399
*
6HCF|1|A1|G|1447
6HCF|1|A1|A|1448
6HCF|1|A1|G|1449
6HCF|1|A1|G|1450
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain R1
- Ribosomal protein S16
- Chain S1
- eS17
- Chain V1
- uS10
- Chain h1
- RACK1
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