IL_6HCJ_004

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6HCJ|1|51|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_004 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.262

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6HCJ|1|51|C|118
6HCJ|1|51|G|119
6HCJ|1|51|A|120
6HCJ|1|51|A|121
*
6HCJ|1|51|U|152
6HCJ|1|51|G|153

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain h3

uL29