IL_6HCJ_009

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_009 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3397

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6HCJ|1|51|G|177
6HCJ|1|51|C|178
6HCJ|1|51|G|179
*
6HCJ|1|51|C|257
6HCJ|1|51|G|258
6HCJ|1|51|C|259
6HCJ|1|51|C|260

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain h3

uL29