IL_6HCJ_021

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCC*GCGG

Length

7 nucleotides

Bulged bases

6HCJ|1|51|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_021 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2409

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6HCJ|1|51|C|458
6HCJ|1|51|C|459
6HCJ|1|51|C|460
*
6HCJ|1|51|G|695
6HCJ|1|51|C|696
6HCJ|1|51|G|697
6HCJ|1|51|G|698

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain r3

eL28