IL_6HCJ_024

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6HCJ|1|51|U|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_024 not in the Motif Atlas

Geometric match to IL_8TQX_002

Geometric discrepancy: 0.335

The information below is about IL_8TQX_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6HCJ|1|51|G|491
6HCJ|1|51|U|492
6HCJ|1|51|G|493
*
6HCJ|1|51|C|661
6HCJ|1|51|C|662

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18