IL_6HCJ_042

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_042 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3608

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6HCJ|1|51|C|1469
6HCJ|1|51|G|1470
6HCJ|1|51|U|1471
6HCJ|1|51|C|1472
*
6HCJ|1|51|G|1493
6HCJ|1|51|U|1494
6HCJ|1|51|G|1495

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain a3

uL15

Chain b3

eL29