IL_6HCJ_046

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6HCJ|1|51|A|1650, 6HCJ|1|51|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_046 not in the Motif Atlas

Homologous match to IL_8C3A_030

Geometric discrepancy: 0.2001

The information below is about IL_8C3A_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6HCJ|1|51|G|1522
6HCJ|1|51|A|1523
6HCJ|1|51|A|1524
6HCJ|1|51|A|1525
6HCJ|1|51|G|1526
*
6HCJ|1|51|C|1648
6HCJ|1|51|U|1649
6HCJ|1|51|A|1650
6HCJ|1|51|G|1651
6HCJ|1|51|U|1652
6HCJ|1|51|A|1653
6HCJ|1|51|G|1654
6HCJ|1|51|C|1655

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain j3

Ribosomal protein L37