IL_6HCJ_055
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGAAUG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6HCJ|1|51|G|1741, 6HCJ|1|51|A|1787, 6HCJ|1|51|A|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_055 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.3481
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6HCJ|1|51|G|1739
6HCJ|1|51|C|1740
6HCJ|1|51|G|1741
6HCJ|1|51|A|1742
6HCJ|1|51|A|1743
6HCJ|1|51|U|1744
6HCJ|1|51|G|1745
*
6HCJ|1|51|C|1785
6HCJ|1|51|A|1786
6HCJ|1|51|A|1787
6HCJ|1|51|A|1788
6HCJ|1|51|C|1789
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain I3
- 60S ribosomal protein L10
- Chain T3
- eL21
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