IL_6HCJ_060
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUAAG*CCAUAC
- Length
- 12 nucleotides
- Bulged bases
- 6HCJ|1|51|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_060 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2655
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HCJ|1|51|G|1904
6HCJ|1|51|U|1905
6HCJ|1|51|U|1906
6HCJ|1|51|A|1907
6HCJ|1|51|A|1908
6HCJ|1|51|G|1909
*
6HCJ|1|51|C|2067
6HCJ|1|51|C|2068
6HCJ|1|51|A|2069
6HCJ|1|51|U|2070
6HCJ|1|51|A|2071
6HCJ|1|51|C|2072
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain F3
- uL30
- Chain Q3
- eL18
- Chain e3
- eL32
- Chain f3
- eL33
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