IL_6HCJ_061

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCGCCCGAU*GGCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_061 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.2756

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCJ|1|51|G|1909
6HCJ|1|51|G|1910
6HCJ|1|51|C|1911
6HCJ|1|51|G|1912
6HCJ|1|51|C|1913
6HCJ|1|51|C|1914
6HCJ|1|51|C|1915
6HCJ|1|51|G|1916
6HCJ|1|51|A|1917
6HCJ|1|51|U|1918
*
6HCJ|1|51|G|2064
6HCJ|1|51|G|2065
6HCJ|1|51|C|2066
6HCJ|1|51|C|2067

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain O3

uL13

Chain S3

eL20

Chain f3

eL33