IL_6HCJ_065
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 6HCJ|1|51|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_065 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3234
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6HCJ|1|51|G|1945
6HCJ|1|51|G|1946
6HCJ|1|51|U|1947
6HCJ|1|51|G|1948
*
6HCJ|1|51|C|2035
6HCJ|1|51|C|2036
6HCJ|1|51|C|2037
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain H3
- uL6
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
- Chain m3
- eL40
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