IL_6HCJ_077

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAG*CGUGC

Length

9 nucleotides

Bulged bases

6HCJ|1|51|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_077 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.3908

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|51|G|2645
6HCJ|1|51|C|2646
6HCJ|1|51|A|2647
6HCJ|1|51|G|2648
*
6HCJ|1|51|C|2685
6HCJ|1|51|G|2686
6HCJ|1|51|U|2687
6HCJ|1|51|G|2688
6HCJ|1|51|C|2689

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain g3

eL34