IL_6HCJ_085

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6HCJ|1|51|A|3663, 6HCJ|1|51|U|3679, 6HCJ|1|51|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_085 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1422

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6HCJ|1|51|C|3660
6HCJ|1|51|G|3661
6HCJ|1|51|A|3662
6HCJ|1|51|A|3663
6HCJ|1|51|G|3664
6HCJ|1|51|G|3665
*
6HCJ|1|51|U|3677
6HCJ|1|51|G|3678
6HCJ|1|51|U|3679
6HCJ|1|51|U|3680
6HCJ|1|51|G|3681
6HCJ|1|51|A|3682
6HCJ|1|51|C|3683
6HCJ|1|51|G|3684

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain p3

eL43