IL_6HCJ_087

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_087 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3738

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6HCJ|1|51|C|3708
6HCJ|1|51|U|3709
6HCJ|1|51|G|3710
*
6HCJ|1|51|C|3741
6HCJ|1|51|G|3742

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8