3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GACCU*AGC
Length
8 nucleotides
Bulged bases
6HCJ|1|51|C|4349
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCJ_103 not in the Motif Atlas
Geometric match to IL_8C3A_419
Geometric discrepancy: 0.3778
The information below is about IL_8C3A_419
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47767.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

6HCJ|1|51|G|4347
6HCJ|1|51|A|4348
6HCJ|1|51|C|4349
6HCJ|1|51|C|4350
6HCJ|1|51|U|4351
*
6HCJ|1|51|A|4363
6HCJ|1|51|G|4364
6HCJ|1|51|C|4365

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain L3
eL13
Chain Q3
eL18
Chain a3
uL15
Chain o3
eL42

Coloring options:


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