IL_6HCJ_107

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6HCJ|1|51|G|4522, 6HCJ|1|51|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_107 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.2111

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCJ|1|51|C|4456
6HCJ|1|51|U|4457
6HCJ|1|51|C|4458
*
6HCJ|1|51|G|4520
6HCJ|1|51|U|4521
6HCJ|1|51|G|4522
6HCJ|1|51|A|4523
6HCJ|1|51|G|4524

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23