IL_6HCJ_112

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_112 not in the Motif Atlas

Geometric match to IL_4E5C_001

Geometric discrepancy: 0.3346

The information below is about IL_4E5C_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6HCJ|1|51|U|4580
6HCJ|1|51|G|4581
6HCJ|1|51|C|4582
*
6HCJ|1|51|G|4721
6HCJ|1|51|G|4722
6HCJ|1|51|A|4723

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13