IL_6HCJ_113

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6HCJ|1|51|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_113 not in the Motif Atlas

Geometric match to IL_4XWF_001

Geometric discrepancy: 0.3968

The information below is about IL_4XWF_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6HCJ|1|51|C|4582
6HCJ|1|51|C|4583
6HCJ|1|51|A|4584
6HCJ|1|51|U|4585
*
6HCJ|1|51|A|4717
6HCJ|1|51|G|4718
6HCJ|1|51|G|4719
6HCJ|1|51|C|4720
6HCJ|1|51|G|4721

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13