IL_6HCJ_117

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6HCJ|1|51|U|4634, 6HCJ|1|51|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_117 not in the Motif Atlas

Geometric match to IL_5TBW_118

Geometric discrepancy: 0.3049

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6HCJ|1|51|U|4632
6HCJ|1|51|G|4633
6HCJ|1|51|U|4634
6HCJ|1|51|A|4635
6HCJ|1|51|U|4636
6HCJ|1|51|G|4637
*
6HCJ|1|51|C|4662
6HCJ|1|51|G|4663
6HCJ|1|51|A|4664
6HCJ|1|51|A|4665
6HCJ|1|51|G|4666

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31