IL_6HCJ_127

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUC*GACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_127 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2952

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|51|G|4992
6HCJ|1|51|G|4993
6HCJ|1|51|G|4994
6HCJ|1|51|U|4995
6HCJ|1|51|C|4996
*
6HCJ|1|51|G|5055
6HCJ|1|51|A|5056
6HCJ|1|51|C|5057
6HCJ|1|51|A|5058
6HCJ|1|51|C|5059

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31