IL_6HCJ_133
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_133 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.3417
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HCJ|1|71|G|71
6HCJ|1|71|U|72
6HCJ|1|71|U|73
6HCJ|1|71|A|74
6HCJ|1|71|G|75
6HCJ|1|71|U|76
6HCJ|1|71|A|77
6HCJ|1|71|C|78
*
6HCJ|1|71|G|98
6HCJ|1|71|G|99
6HCJ|1|71|A|100
6HCJ|1|71|A|101
6HCJ|1|71|U|102
6HCJ|1|71|A|103
6HCJ|1|71|C|104
Current chains
- Chain 71
- 5S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain F3
- uL30
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
- Chain T3
- eL21
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