IL_6HCJ_142

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

6HCJ|1|A2|G|113, 6HCJ|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_142 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3969

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HCJ|1|A2|G|108
6HCJ|1|A2|U|109
6HCJ|1|A2|U|110
6HCJ|1|A2|A|111
6HCJ|1|A2|U|112
6HCJ|1|A2|G|113
6HCJ|1|A2|G|114
6HCJ|1|A2|U|115
*
6HCJ|1|A2|A|348
6HCJ|1|A2|A|349
6HCJ|1|A2|C|350
6HCJ|1|A2|G|351
6HCJ|1|A2|U|352
6HCJ|1|A2|C|353

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain J2

eS8

Chain M2

Ribosomal protein S11